DENVER — The judge in the deadly Colorado theater shooting case refused Monday to lift a gag order that prevents the University of Colorado from releasing information about former graduate student and suspect James Holmes.

Arapahoe County District Judge William Sylvester also ruled that he would release some court documents in the case.

James Holmes, a former Ph.D. student at the university, is accused of going on a shooting rampage on July 20 at the midnight showing of the new Batman movie in suburban Denver, killing 12 people and injuring 58 others.

Members of the public will have access to a list of documents filed, as well as some submitted by attorneys. Some key documents, including the arrest affidavit that outlines law enforcement's case against Holmes, will remain sealed. Documents being released Monday were routine documents that are standard in criminal cases that include allowing defense attorneys to inspect the crime scene.

In one document, however, defense attorney Daniel King argued that Holmes be allowed to sit with his attorneys at the defense table, and not in the jury box where Holmes sat during his initial appearance July 23.

King said that the deputies placed him there out of concerns for Holmes' safety "due to the apparent presence, statements, and behavior of individuals in the audience of the courtroom."

King argued that seating Holmes away from the defense table gave the impression that Holmes was expressing threats or exhibiting dangerous behavior, threatening a fair trial. That request was granted.

During the initial hearing three days after the shooting, at least two men stared at Holmes during the hearing, which concluded without incident.

Sylvester said the case remains under investigation and releasing that information would harm Holmes' right to a fair trial and be contrary to public interest.

In his order on the University of Colorado, he said, he "will not jeopardize the integrity of the process and the truth-seeking functions" of the courts by authorizing the premature release of records.

Last week, Holmes' lawyers said he suffers from a mental illness but didn't disclose any details about his condition. Defense attorney Daniel King said Holmes sought out university psychiatrist Lynne Fenton for help weeks before the shooting.

A hearing is scheduled for Thursday to establish they had a doctor-patient relationship. Sylvester said he may reconsider his order about what information the university can release after that issue is settled.

Sylvester he considered arguments by prosecutors and defense attorneys that hundreds of witnesses and victims have not been interviewed during "the critical early stages of the investigation."

"It is certainly in the public's interest that law enforcement officials conduct a complete investigation thoroughly and efficiently," Sylvester wrote.

Steve Zansberg, the attorney representing a consortium of 21 media organizations, including The Associated Press, said in a prepared statement that Sylvester's partial release of documents brings "much needed transparency to this judicial proceeding."

But he added: "We are disappointed that the affidavits of probable cause remain under seal at this time, but are hopeful that the Court will revisit that issue sometime in the not too distant future."

Documents that will be released under Sylvester's order include Holmes' defense attorney's request that their own experts be present for scientific testing of evidence. In documents, the evidence to be tested includes guns, bullets, shell casings and biological samples, which can include DNA, blood, or other bodily fluids.

Police said Holmes methodically stockpiled guns, ammunition and material for explosives for months and that he had received shipments at both the university and his nearby apartment.

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  • Rebecca Ann Wingo

    This undated photo provided by the family shows Rebecca Ann Wingo. Wingo, 32, was one of the victims killed in the Friday, July 20, 2012 movie theater shooting in Aurora, Colo. (AP Photo)

  • The undated photo provided by the family shows Alex Teves. Teves, 24, was one of the victims killed in the Friday, July 20, 2012 movie theater shooting in Aurora, Colo. (AP Photo/Teves Family)

  • Jessica Ghawi

    This undated photo provided by the family shows Jessica Ghawi. Ghawi is one of the 12 people killed when a gunman barged into a crowded theater, set off gas canisters and opened fire as spectators dove for cover and tried to flee, Friday, July 20, 2012, in Aurora, Colo. Dozens of others were injured, including 11 in critical condition. (AP Photo/Courtesy of the family)

  • This undated photo provided by the Larimer family shows John Larimer. Relatives have identified Larimer, a U.S. Navy sailor, as one of the victims killed by a gunman at a showing of the new Batman movie, early Friday, July 20, 2012, in Aurora, Colo. (AP Photo/Larimer family)

  • This undated photo provided by Robert Sullivan shows Veronica Moser-Sullivan, the youngest person slain in the July 20 attack that left 12 dead and dozens wounded during the Aurora theater shootings. Robert Sullivan, Veronica's grandfather, wants a thief to return pictures of the child that were stolen from his home in a burglary this week. He said Wednesday, Oct. 3, 2012 that four cameras were stolen, including one that had a memory card with more than 40 photos of Veronica at a school celebration. Other images show her at a playground. (AP Photo/Robert Sullivan)

  • This undated photo provided by the family shows Jonathan T. Blunk, 26, of Aurora, Colo. with his two children. Blunk was one of the victims in the Friday, July 20, 2012 Aurora, Colo. movie theater shooting. (AP Photo)

  • This undated photo provided by the U.S. Air Force shows Jesse Childress. The 29-year-old, from Thornton, Colo., was one of the victims in the Friday, July 20, 2012 Aurora, Colo. movie theater shooting. Childress was an Air Force cyber-systems operator based at Buckley Air Force Base in Aurora. (AP Photo/U.S. Air Force)

  • Alexander J. Boik

    This undated image provided by the family shows Alexander J. Boik, known as AJ. Boik was one of the victims in the Friday, July 20, 2012 Aurora, Colo. movie theater shooting. (AP Photo)

  • Matt McQuinn, Samantha Yowler

    This undated photo provided by the family shows Matt McQuinn, left, and Samantha Yowler. McQuinn was killed and Yowler was wounded in the Friday, July 20, 2012 Aurora, Colo., movie theater shooting. (AP Photo)

  • This photo provided by the family shows Micayla Medek. Medek, 23, is one of the 12 people killed when a gunman barged into a crowded theater, set off gas canisters and opened fire as spectators dove for cover and tried to flee, Friday, July 20, 2012, in Aurora, Colo. Dozens of others were injured, including 11 in critical condition. (AP Photo/Courtesy of the family)

  • A tribute to movie theater shooting victim AJ Boik, is shown along with his photo, on a message table Saturday, July 21, 2012, at a vigil at Gateway High School in Aurora, Colo., Boik, was a student at the school and was killed along with 11 others when a gunman opened fire in a movie theater. (AP Photo/Ted S. Warren)

  • This photo provided by The Cowden Family shows shooting victim Gordon W. Cowden. Twelve people were killed and dozens were injured in the attack early Friday, July 20, 2012 at the packed theater during a showing of the Batman movie, "The Dark Knight Rises." in Aurora, Colo. Police have identified the suspected shooter as James Holmes, 24. (AP Photo/The Cowden Family)

  • Jonathan Blunk, Jesse Childress, Gordon Cowden, Jessica Ghawi, John Larimer, Micayla Medek, Alex Sullivan

    This combination of photos provided by their families shows seven of the 12 victims in the Friday, July 20, 2012 Aurora, Colo. movie theater shooting. Top row from left are Jonathan Blunk, Jesse Childress, Gordon Cowden, Jessica Ghawi, and bottom row from left, John Larimer, Micayla Medek, Alex Sullivan. (AP Photo)

  • This Sept. 20, 2011 photo provided by The Sullivan Family, shows shooting victim Alex Sullivan. Twelve people were killed and dozens were injured in the attack early Friday, July 20, 2012 at the packed theater during a showing of the Batman movie, "The Dark Knight Rises." in Aurora, Colo. Police have identified the suspected shooter as James Holmes, 24. (AP Photo/The Sullivan Family)

  • The Bass Pro Shops store in Denver, Colo. is shown, Saturday, July 21, 2012. The is store is where the gunman in Friday's movie theater shooting in Aurora, Colo., allegedly purchased two of his weapons. (AP Photo/Ted S. Warren)

  • The Gander Mountain store in Aurora, Colo. is shown, Sunday, July 22, 2012. The is store is where the gunman in Friday's movie theater shooting allegedly purchased one of his weapons. (AP Photo/Ted S. Warren)

  • Tom Sullivan , holds a photograph of his son, Alex Sullivan, as he pleads with the media to help him find his son, outside Gateway High School on Friday, July 20, 2012 in Aurora, Colo. Alex Sullivan, was celebrating his 27th birthday by attending midnight premiere of the Batman movie Friday night. A gunman wearing a gas mask set off an unknown gas and fired into the crowded movie theater killing 12 people and injuring at least 50 others, authorities said. (Photo credit: AP Photo/Barry Gutierrez)

  • A woman cries outside Gateway High School where witness were brought for questioning after a gunman opened fire at a midnight premiere of The Dark Knight Rises Batman movie Friday, July 20, 2012 in Aurora, Colo. A gunman wearing a gas mask set off an unknown gas and fired into the crowded movie theater killing 12 people and injuring at least 50 others, authorities said. (Photo credit: AP Photo/Barry Gutierrez)

  • Tom Sullivan, center, embraces family members outside Gateway High School where he has been searching franticly for his son Alex Sullivan who celebrated his 27th birthday by going to see "The Dark Knight Rises," movie where a gunman opened fire Friday, July 20, 2012, in Aurora, Colo. (Photo credit: AP Photo/Barry Gutierrez)

  • Eyewitness Chandler Brannon, 25, sits outside Gateway High School where witnesses were brought for questioning after a shooting at a movie theater showing the Batman movie "The Dark Knight Rises," Friday, July 20, 2012 in Aurora. A gunman wearing a gas mask set off an unknown gas and fired into the crowded movie theater killing 12 people and injuring at least 50 others, authorities said. (Photo credit: AP Photo/Barry Gutierrez)

  • A small group prays outside Gateway High School where witness were brought for questioning Friday, July 20, 2012 in Aurora, Colo. A gunman wearing a gas mask set off an unknown gas and fired into the crowded movie theater killing 12 people and injuring at least 50 others, authorities said. (Photo credit: AP Photo/Barry Gutierrez)

  • Family and friends wait outside Gateway High School where witnesses were brought for questioning after a shooting at a movie theater showing the Batman movie "The Dark Knight Rises," Friday, July 20, 2012 in Aurora, Colo. A gunman wearing a gas mask set off an unknown gas and fired into the crowded movie theater killing 12 people and injuring at least 50 others, authorities said. (Photo credit: AP Photo/Barry Gutierrez)

  • Eyewitness Jacob Stevens, 18, hugs his mother Tammi Stevens after being interview by police outside Gateway High School where witnesses were brought for questioning Friday, July 20, 2012 in Aurora, Colo. A gunman wearing a gas mask set off an unknown gas and fired into the crowded movie theater killing 12 people and injuring at least 50 others, authorities said. (Photo credit: AP Photo/Barry Gutierrez)

  • Eyewitness Isaiah Bow hugs his mother Shamecca Davis after being questioned by police outside Gateway High School where witnesses were brought in, Friday, July 20, 2012 in Aurora, Colo. After leaving the theater Bow went back in to find his girlfriend. "I didn't want to leave her in there. But she's ok now," Bow said. A gunman wearing a gas mask set off an unknown gas and fired into the crowded movie theater killing 12 people and injuring at least 50 others, authorities said. (Photo credit: AP Photo/Barry Gutierrez)

  • Emma Goos, 19, hugs her mother, Judy Goos, outside Gateway High School where witnesses were brought for questioning Friday, July 20, 2012, in Aurora, Colo. Emma was in the third row of the theater of the new Batman movie when the shooter entered. She helped apply pressure to a man's head who was injured. (Photo credit: AP Photo/Barry Gutierrez)

  • Police cars in front of the Century 16 theater in Aurora, Colorado where a gunman opened fire during the opening of the new Batman movie "The Dark Knight Rises" killing at least 15 people and wounding 50 others on the morning of July 20, 2012. The shooting suspect in custody after at least 12 people were shot dead and around 50 were wounded at a movie screening in the United States has been identified as 24-year-old James Holmes, US media said Friday. Television networks cited the FBI as saying that Holmes, from the town of Aurora, Colorado, scene of the midnight shooting at a screening of the Batman movie "The Dark Knight Rises," did not appear to have any known terrorism connections. (Photo credit: AFP PHOTO/JONATHAN CASTNER JONATHAN CASTNER/AFP/GettyImages)

  • Police tape cordons off the parking area around the Century 16 movie theater in Aurora, Colorado, July 20, 2012 where a gunman opened fire during the showing of the new Batman movie. At least 12 people were killed and around 50 wounded in the cinema shooting. (Photo credit: AFP PHOTO JONATHAN CASTNERJONATHAN CASTNER/AFP/GettyImages)

  • Police cars in front of the Century 16 theater in Aurora, Colorado where a gunman opened fire during the opening of the new Batman movie "The Dark Knight Rises" killing at least 15 people and wounding 50 others on the morning of July 20, 2012. The shooting suspect in custody after at least 12 people were shot dead and around 40 were wounded at a movie screening in the United States has been identified as 24-year-old James Holmes, US media said Friday. Television networks cited the FBI as saying that Holmes, from the town of Aurora, Colorado, scene of the midnight shooting at a screening of the Batman movie "The Dark Knight Rises," did not appear to have any known terrorism connections. (Photo credit: AFP PHOTO/JONATHAN CASTNERJONATHAN CASTNER/AFP/GettyImages)

  • Police cars in front of the Century 16 theater in Aurora, Colorado where a gunman opened fire during the opening of the new Batman movie "The Dark Knight Rises" killing at least 15 people and wounding 50 others on the morning of July 20, 2012. The shooting suspect in custody after at least 12 people were shot dead and around 50 were wounded at a movie screening in the United States has been identified as 24-year-old James Holmes, US media said Friday. Television networks cited the FBI as saying that Holmes, from the town of Aurora, Colorado, scene of the midnight shooting at a screening of the Batman movie "The Dark Knight Rises," did not appear to have any known terrorism connections. (Photo credit: AFP PHOTO/JONATHAN CASTNERJONATHAN CASTNER/AFP/GettyImages)

  • Police cars are seen in the parking area around the Century 16 movie theater in Aurora, Colorado, July 20, 2012 where a gunman opened fire during the showing of the new Batman movie. At least 12 people were killed and around 50 wounded in the cinema shooting. (Photo credit: AFP PHOTO JONATHAN CASTNERJONATHAN CASTNER/AFP/GettyImages)

  • Police use a video camera to look inside an apartment where the suspect in a shooting at a movie theatre lived in Aurora, Colo., Friday, July 20, 2012. As many as 12 people were killed and 50 injured at a shooting at the Century 16 movie theatre early Friday during the showing of the latest Batman movie. (Photo credit: AP Photo/Ed Andrieski)

  • Police break out a window of an apartment where the suspect in a shooting at a movie theatre lived in Aurora, Colo., Friday, July 20, 2012. As many as 12 people were killed and 50 injured at a shooting at the Century 16 movie theatre early Friday during the showing of the latest Batman movie. (Photo credit: AP Photo/Ed Andrieski)

  • Shamecca Davis hugs her son Isaiah Bow, who was an eye witness to the shooting, outside Gateway High School where witness were brought for questioning Friday, July 20, 2012 in Denver. After leaving the theater Bow went back in to find his girlfriend. " I didn't want to leave her in there. But she's ok now," Bow said. A gunman wearing a gas mask set off an unknown gas and fired into a crowded movie theater at a midnight opening of the Batman movie "The Dark Knight Rises," killing at least 12 people and injuring at least 50 others, authorities said. (Photo credit: AP Photo/Barry Gutierrez)

  • Judy Goos, second from left, hugs her daughters friend, Isaiah Bow, 20, while eye witnesses Emma Goos, 19, left, and Terrell Wallin, 20, right, gather outside Gateway High School where witness were brought for questioning Friday, July 20, 2012 in Denver. A gunman wearing a gas mask set off an unknown gas and fired into a crowded movie theater at a midnight opening of the Batman movie "The Dark Knight Rises," killing at least 12 people and injuring at least 50 others, authorities said. (Photo credit: AP Photo/Barry Gutierrez)

  • A SWAT team officer stands watch near an apartment house where the suspect in a shooting at a movie theatre lived in Aurora, Colo., Friday, July 20, 2012. As many as 14 people were killed and 50 injured at a shooting at the Century 16 movie theatre early Friday during the showing of the latest Batman movie. (Photo credit: AP Photo/Ed Andrieski)

  • Police gather near an apartment house where the suspect in a shooting at a movie theatre lived in Aurora, Colo., Friday, July 20, 2012. As many as 12 people were killed and 50 injured at a shooting at the Century 16 movie theatre early Friday during the showing of the latest Batman movie. (Photo credit: AP Photo/Ed Andrieski)

  • A SWAT team officer stands watch near an apartment house where the suspect in a shooting at a movie theatre lived in Aurora, Colo., Friday, July 20, 2012. As many as 12 people were killed and 50 injured at a shooting at the Century 16 movie theatre early Friday during the showing of the latest Batman movie. (Photo credit: AP Photo/Ed Andrieski)

  • Jacob Stevens, 18, hugs his mother Tammi Stevens after being interview by police outside Gateway High School where witness were brought for questioning after a shooting at a movie theater, Friday, July 20, 2012 in Denver. A gunman wearing a gas mask set off an unknown gas and fired into a crowded movie theater at a midnight opening of the Batman movie "The Dark Knight Rises," killing at least 12 people and injuring at least 50 others, authorities said. (Photo credit: AP Photo/Barry Gutierrez)

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  • Police are pictured outside of a Century 16 movie theatre where as many as 12 people were killed and many injured at a shooting during the showing of a movie at the in Aurora, Colo., Friday, July 20, 2012. (Photo credit: AP Photo/Ed Andrieski)

  • Police are pictured outside of a Century 16 movie theatre where as many as 12 people were killed and many injured at a shooting during the showing of a movie at the in Aurora, Colo., Friday, July 20, 2012. (Photo credit: AP Photo/Ed Andrieski)

  • Aurora Police Chief Daniel Oates talks to media at Aurora Mall where as many as 12 people were killed and many injured at a shooting at the Century 16 movie theatre in Aurora, Colo., Friday, July 20, 2012. (Photo credit: AP Photo/Ed Andrieski)

  • Aurora Police Chief Daniel Oates talks to media at the Aurora Mall where as many as 14 people were killed and many injured at a shooting at the Century 16 movie theatre in Aurora, Colo., Friday, July 20, 2012. (Photo credit: AP Photo/Ed Andrieski)

  • Police are pictured outside of a Century 16 movie theatre where as many as 12 people were killed and many injured at a shooting during the showing of a movie at the in Aurora, Colo., Friday, July 20, 2012. (Photo credit: AP Photo/Ed Andrieski)

  • Police are pictured outside of a Century 16 movie theatre where as many as 12 people were killed and many injured at a shooting during the showing of a movie at the in Aurora, Colo., Friday, July 20, 2012. (Photo credit: AP Photo/Ed Andrieski)

  • People gather outside the Century 16 movie theatre in Aurora, Colo., at the scene of a mass shooting early Friday morning, July 20, 2012. Police Chief Dan Oates says 12 people are dead following the shooting at the suburban Denver movie theater. He says 50 others were injured when gunfire erupted early Friday at the Aurora theater. Oates says a gunman appeared at the front of one of the Century 16 theaters. <em>Photo Credit: Karl Gehring, <a href="http://www.huffingtonpost.com/news/exposure/" target="_hplink">Denver Post</a>. </em> / AP

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