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Artificial Life Boots Up: Scientists Unveil Manmade DNA (VIDEO)

Huffington Post/AP   First Posted: 05/20/10 04:27 PM ET Updated: 05/25/11 05:30 PM ET

Artificial Life Synthetic Cell Manmade Dna

WASHINGTON — Scientists announced a bold step Thursday in the enduring quest to create artificial life. They've produced a living cell powered by manmade DNA.

While such work can evoke images of Frankenstein-like scientific tinkering, it also is exciting hopes that it could eventually lead to new fuels, better ways to clean polluted water, faster vaccine production and more.

Is it really an artificial life form?

The inventors call it the world's first synthetic cell, although this initial step is more a re-creation of existing life – changing one simple type of bacterium into another – than a built-from-scratch kind.

But Maryland genome-mapping pioneer J. Craig Venter said his team's project paves the way for the ultimate, much harder goal: designing organisms that work differently from the way nature intended for a wide range of uses. Already he's working with ExxonMobil in hopes of turning algae into fuel.

"This is the first self-replicating species we've had on the planet whose parent is a computer," Venter told reporters.

And the report, being published Friday in the journal Science, is triggering excitement in this growing field of synthetic biology.

"It's been a long time coming, and it was worth the wait," said Dr. George Church, a Harvard Medical School genetics professor. "It's a milestone that has potential practical applications."

Following the announcement, President Barack Obama directed the Presidential Commission for the Study of Bioethical Issues he established last fall to make its first order of business a study of the milestone.

"The commission should consider the potential medical, environmental, security and other benefits of this field of research, as well as any potential health, security or other risks," Obama wrote in a letter to the commission's chairwoman, Amy Gutmann, the president of the University of Pennsylvania.

Obama also asked that the commission develop recommendations about any actions the government should take "to ensure that America reaps the benefits of this developing field of science while identifying appropriate ethical boundaries and minimizing identified risks."

Scientists for years have moved single genes and even large chunks of DNA from one species to another. At his J. Craig Venter Institute in Rockville, Md., and San Diego, Venter's team aimed to go further. A few years ago, the researchers transplanted an entire natural genome – the genetic code – of one bacterium into another and watched it take over, turning a goat germ into a cattle germ.

Next, the researchers built from scratch another, smaller bacterium's genome, using off-the-shelf laboratory-made DNA fragments.

Friday's report combines those two achievements to test a big question: Could synthetic DNA really take over and drive a living cell? Somehow, it did.

"This is transforming life totally from one species into another by changing the software," said Venter, using a computer analogy to explain the DNA's role.

The researchers picked two species of a simple germ named Mycoplasma. First, they chemically synthesized the genome of M. mycoides, that goat germ, which with 1.1 million "letters" of DNA was twice as large as the germ genome they'd previously built.

Then they transplanted it into a living cell from a different Mycoplasma species, albeit a fairly close cousin.

At first, nothing happened. The team scrambled to find out why, creating a genetic version of a computer proofreading program to spell-check the DNA fragments they'd pieced together. They found that a typo in the genetic code was rendering the manmade DNA inactive, delaying the project three months to find and restore that bit.

"It shows you how accurate it has to be, one letter out of a million," Venter said.

That fixed, the transplant worked. The recipient cell started out with synthetic DNA and its original cytoplasm, but the new genome "booted up" that cell to start producing only proteins that normally would be found in the copied goat germ. The researchers had tagged the synthetic DNA to be able to tell it apart, and checked as the modified cell reproduced to confirm that new cells really looked and behaved like M. mycoides.

"All elements in the cells after some amount of time can be traced to this initial artificial DNA. That's a great accomplishment," said biological engineer Ron Weiss of the Massachusetts Institute of Technology.

Even while praising the accomplishment – "biomolecular engineering of the highest order," declared David Deamer of the University of California, Santa Cruz – many specialists say the work hasn't yet crossed the line of truly creating new life from scratch.

It's partially synthetic, some said, because Venter's team had to stick the manmade genetic code inside a living cell from a related species. That cell was more than just a container; it also contained its own cytoplasm – the liquid part.

In other words, the synthetic part was "running on the 'hardware' of the modern cell," University of Southern Denmark physics professor Steen Rasmussen wrote in the journal Nature, which on Thursday released essays of both praise and caution from eight leaders in the field.

The environmental group Friends of the Earth said the new work took "genetic engineering to an extreme new level" and urged that Venter stop until government regulations are put in place to protect against these kind of engineered microbes escaping into the environment.

Venter said he removed 14 genes thought to make the germ dangerous to goats before doing the work, and had briefed government officials about the work over the course of several years – acknowledging that someone potentially could use this emerging field for harm instead of good.

But MIT's Weiss said it would be far easier to use existing technologies to make bioweapons: "There's a big gap between science fiction and what your imagination can do and the reality in research labs."

Venter founded Synthetic Genomics Inc., a privately held company that funded the work, and his research institute has filed patents on it.

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WASHINGTON — Scientists announced a bold step Thursday in the enduring quest to create artificial life. They've produced a living cell powered by manmade DNA. While such work can evoke images o...
WASHINGTON — Scientists announced a bold step Thursday in the enduring quest to create artificial life. They've produced a living cell powered by manmade DNA. While such work can evoke images o...
 
 
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09:11 AM on 05/28/2010
Venter is a driven man/iac, in both the best and worst senses of the word. He wants to be remembered as a Thomas Edison type, and is fighting for a legacy, which is neither good nor bad. What he is doing, though, has the potential to be disastrous, and self regulation and safety reviews are not sufficient. Needs outside regulation. I wish him, his teams, and humanity the best as they proceed.

Not sure if this really is new life though, doesn't seem to fit the definition, or pass the smell test. Amazing stuff neverless.

Perhaps the real secret of life would be better found in analyzing the germination of seeds, and how chemical reaction differ in a moist seed of 2 degrees C (too cold to germinate), 20C (just right), and 50C (too hot)

What is the difference in these seeds? The answer is in the hydrolysis process, and the chemicals which do it. My favorites are the phosporus/carbon bonds and peptides, and how all HLs interact with sodium. At any rate, get a hydrolase at just the right temperature, and then it may lead to the ELECTRICAL/magnetic reaction that may be sustained, and control the chemical one That is real, and complete, new life.
01:14 PM on 05/25/2010
Kutzu--our land, Asian carp--our waterways, self replicating organisms--our bodies???????????
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Patrick Demkowski
07:48 PM on 05/23/2010
Kinda freaky!
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Asmodean1
Truth is only true if based on facts.
07:31 PM on 05/23/2010
i wonder what would happen...
if the gov't of the united states of america would state to each and every person in the world. (ofcourse this is directed at science)
-------find an alternate form of energy that will NOT harm the world------.

and AND we will give you 100 billion. we could do that. this country could easily do that.... the point is there is NO real funding for other energys that what we avhe today.
they can find a way to gene splice and "create DNA" but with energy we are f@cked
10:53 PM on 05/22/2010
Umm... Hello HuffPost! This is artificial life! It's kind of a big deal. While I won't say I don't give a damn about CEO's getting new jets, this is top headline news. At least put this square right under whatever Obama pic you've got as the major headline.
07:41 PM on 05/22/2010
The ethical ramification of this type of biological research are staggering. Hopefully, genetic engineers will consider the implications carefully in terms of the biosphere and the interconnected nature of natural biodiversity. Too bad we humans possess no "wisdom gene"to guide us in the application of highly technical knowledge.
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Asmodean1
Truth is only true if based on facts.
07:23 PM on 05/23/2010
i agree with you... i am not sure what horror could be unleashed on the planet.... butt...

remember Jurrasic park?

Dr. Ian Malcolm: -------"Yeah, but your scientists were so preoccupied with whether or not they could, they didn't stop to think if they should".
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tsihcrana
07:22 PM on 05/22/2010
For the first time in Human history, we have created life.
Not cloning an existing life-form, but creating a real gee-whiz cell based life-form.

I mean we never make mistakes right? It's not like we could screw-up some protein sequence in the DNA, and end up creating non nuclear gene inheritance scenario's that follow a 'new set of laws of nature', or create a microbe that would kill all plant like on Earth (THAT almost happened in 1990, it was called Klebsiella planticola, Google it for a REAL scare )

I am all for science, but when you realize that this genetics lab is funded by BP and other OIL companies, it makes you wonder what they are attempting to do, other than make a boat load of cash.....
As we all know it is seldom what you know that kills you, it is what you don't know that gets ya every time.
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10:37 PM on 05/22/2010
Oh stop being such an alarmist. I am sure there will be industry standards to insure total, complete environmental protections. You'll recognize the players who will make up these committees. Companies such as BP and Exxon. Now you can sleep comfortably tonight.

Deja Bull, all over again.
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tsihcrana
01:35 PM on 05/23/2010
I am snugly tucked into bed, sleeping soundly, secure in the knowledge that the best & brightest have our backs...GO BIG OIL!!!
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Hirnlego
06:38 PM on 05/22/2010
First round of ill-informed objections to the first synthetic bacterium

http://scienceblogs.com/pharyngula/2010/05/first_round_of_ill-informed_ob.php
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Vieux Charles
Educating America, one liberal at a time
11:41 AM on 05/22/2010
I'm of the opinion that "E.T.'s" are actually humans from our own future. This would explain their pre-occupation with human reproduction.

They are likely a race incapable of natural reproduction whose own biology was (will be) engineered through the coming millennia.

Of course I could be wrong, but these advancements in genetics surely should make us wonder as to what we will someday be.
06:03 AM on 05/22/2010
Venter announced a year or so back that he had set a goal to make an artificial living cell; this current achievement is a baby step on the way.

The really HIGH gate to jump will be making a working ribosome. A ribosome is a complex protein that is used by cells to transcribe genetic data to make complex proteins; ribosomes are the machines that link DNA to proteins, and are the most fundamental of all structures in modern living cells.

In living cells, the proteins that make up ribosomes are made.... by other ribosomes. Gives Venter's group a serious "chicken & egg" problem to solve!

Presumably this problem was solved early in life's history on Earth, with some sort of intermediate mechanisms used to first forge the link between DNA and protein. Sadly, if any organisms using these early chemical machines have survived, they have not been found. Venter's group are on their own,here!
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Vieux Charles
Educating America, one liberal at a time
11:31 AM on 05/22/2010
"Presumably"

Good word choice. Real science doesn't take presumptions as fact.

"chicken & egg"

Good analogy, and a conundrum that begs the question: whether here by design or chance is the human mind really capable of a complete understanding of the world around it?

Science marches on.
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Peter Finarovsky
08:25 PM on 05/21/2010
This sounds like it could be a potential revolution in scientific ability and understanding. Absolutely fascinating. I only hope that scientists will use their knowledge to do good and not evil.
11:34 AM on 05/22/2010
I'm betting it will start good and descend to evil.
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popart
retired school teacher
03:33 PM on 05/21/2010
the only thing i look forward to from our friends in the white lab coats is milk without cows....anyone who has ever driven past a few miles of dairy lots will understand...and while you are at it picture those bellies of bovines covered in mud and dung......ugh
04:43 PM on 05/21/2010
Hemp milk is fantastic.

It's made from the shelled seeds of industrial hemp plants, pureed with water, and strained to remove the fiber. The protein is more complete and digestible than soy or even egg white, and the fat is 85% essential fatty acids in an ideal 3:1 ratio of omega-6 to omega-3. Plus it has a wonderful nutty flavor and creamy texture. With the careful addition of acid and heat, the proteins can be coagulated to form products similar to yogurt or cheese/tofu.

Unfortunately (and inexplicably), it is illegal to cultivate industrial hemp in the United States, so the availability of manufactured hemp milk is poor and the prices of shelled or heat-sterilized hemp seeds (imported from Canada) are artificially inflated.

Almond milk remains the most nutritious and (in my opinion) delicious non-dairy milk that's widely available in American markets, but almond cultivation is entirely dependent on a collapsing population of honeybees for pollination, so who knows how much longer we'll be able to produce such foods economically.
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02:52 PM on 05/21/2010
And articicial death is created by BP.........................
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05:38 PM on 05/21/2010
correction that's artificial death...........
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Blivet
01:04 PM on 05/21/2010
“Venter founded Synthetic Genomics Inc., a privately held company that funded the work, and his research institute has filed patents on it.”

That line says it all.

It’s all about the money. The fact that they have chosen to patent the process means that use of it in further research could be limited unless or until other labs pay a premium for its use. This could make Ventner and his lawyers fabulously wealthy and any potential benefits to humanity could be seriously hampered.

This is the sort of research that used to be developed in college and university labs and freely distributed to researchers who wished to do further investigations on the subject. It was federal support for basic research in the 50’s through the 70’s that led to most of the technological advances that we take for granted today.
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VeryGrood
only class worse than micro-bio was molecular-bio
02:23 PM on 05/21/2010
Should they give this tech out for free and eat the cost? This kind of research can only be completed when a company has incentive (read: profit) to do it. Love it or hate it, this is the way research works. I promise you that this "sort of research" was NOT being completed in federally funded labs in the 50's, 60's or 70's. It is orders of magnitude more complex today.

A lot of people have the misconception that breakthroughs like this only require a bit of money and an idea. Then you throw a few scientists into a room with some beakers... and 3 months later you have a breakthrough. Coming from academia, I can assure you that this isn't the case.
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SolarPowerGuy
Ph.D., Immunology; Solar power @ home; Green Party
05:02 PM on 05/21/2010
Craig Venter is a former NIH scientist. He is one of many promising scientists whose earlier ideas, including several that were ultimately quite successful and useful, failed to obtain grants.

Twenty years ago I was posting to the Internet that the public had better step up its funding of basic science, otherwise industry would step into the void. And the result would be that private hands would own technological advances that the public wished they owned themselves. That day has started to arrive.

It's hard for me to fault Dr. Venter, though. We, the taxpayers, essentially pushed him out.
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bweve05
12:34 PM on 05/21/2010
this dosnt seem too far a step past swapping dna in haploid cells during the cloning process... dosnt seem like that big of a breakthrough to me... maybe im just not easily impressed
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SolarPowerGuy
Ph.D., Immunology; Solar power @ home; Green Party
05:04 PM on 05/21/2010
The big news is the size of the synthetic DNA construct -- one million base pairs, large enough to describe an entire living organism.
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bweve05
09:03 PM on 05/21/2010
but isnt that just a bunch of PCR and time? if we can map our genomes how is this so remarkable? i mean kudos to them and all but still...